In this study, we first characterized the complete mitogenome of Pygathrix nigripes, and analysed its phylogenetic status. The circular mitogenome was 16,534bp in length, and contained 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes and one non-coding control region (D-loop). These genes except ND6 and 8 tRNA genes were encoded on the H-strand. The phylogenetic analysis exhibited that our sequence formed a sister branch with P. cinereal and P. nemaeus of genus Pygathrix, which showed a closer genetic relationship of the three species. These information contribute to molecular, phylogenetic studies and genetic diversity conservation for this species.
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